The best thing to do if your server is infected with a worm or virus is to have the server reinstalled. Then restore your data from known good backups --
you DO make backups don't you?. The reason for this is if your server is compromised/infected, a rootkit (
http://en.wikipedia.org/wiki/Rootkit) may have been installed. This can make it impossible to detect all the virus and trojans on an infected server. Here is a detailed story about a Virus and how difficult it is to remove:
http://www.darkreading.com/shared/printableArticle.jhtml?articleID=215800583If this is not a good option for you, you can try to scan for infected files with an antivirus program. But sometimes it is too late and the virus blocks scanners from being installed. Then you will have to try an online virus scanner.
Several online virus scannersThey are slower, but you should be able to trust their scanner is not infected (like your server).
# A-Squared (Emsisoft) malware scan at
http://www.emsisoft.com/en/software/ax/# ESET (NOD32) malware scan at
http://www.eset.com/onlinescan/index.php# Microsoft's Live One Care has several types of scans at
http://onecare.live.com/site/en-us/default.htm# Panda ActiveScan at
http://www.pandasecurity.com/usa/homeusers/solutions/activescan/default.htm# SuperAntiSpyware's research center provides free scans of running computer processes at
http://www.fileresearchcenter.com/# Trend Micro's Housecall scan for malware is at
http://housecall.trendmicro.com/ Virus removal tools# Alwil Software has a free cleaner tool, Avast Free Virus Cleaner, at
http://www.avast.com/eng/programs.html# AVG has free removal tools (including VCleaner) at
http://free.grisoft.com/doc/virus-removal/us/frt/0# CureIt from Dr. Web is a capable free scanner that can be updated manually at
http://www.freedrweb.com/# F-Secure has some removal tools at
http://www.f-secure.com/security_center/malware_removal_tools.html# Malwareteks has spyware removal programs at
http://www.malwareteks.com/forum-t408.html# Microsoft's Malicous Removal Tool (updated monthly on Patch Tuesday) is at
http://www.microsoft.com/security/malwareremove/default.mspx# Norman's removal tools and information is at
http://www.norman.com/Virus/en-us# Norman also has a capable Malware Cleaner (use in Safe Mode) at
http://www.norman.com/Virus/Virus_removal_tools/24789/en-us# Smitfraud/Antivermins removal tools are at
http://www.bleepingcomputer.com/forums/topic69886.html# Softpedia has some tools at
http://www.softpedia.com/get/Antivirus/Malware-Removal-Tool.shtml# SuperAntiSpyware has a capable free on-demand antispyware program for home users at
http://www.superantispyware.com/# Symantec has individual malware removal tools at
http://www.symantec.com/business/security_response/removaltools.jsp# Trend Micro has the helpful HijackThis analyzer and some proactive tools at
http://www.trendsecure.com/portal/en-US/tools/security_tools/hijackthisThanks to Clamwin for these links!